PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X9YQG
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 192aa    MW: 21502.3 Da    PI: 6.1646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X9YQGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-054264123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ Fs+   L  H+++H
  Aradu.X9YQG 42 YECNFCKRGFSNAQALGGHMNLH 64
                 99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-43968IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.29E-73969No hitNo description
PROSITE profilePS5015711.4274269IPR007087Zinc finger, C2H2
PfamPF139121.5E-54266IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKQSDDDQD HRRTAEKVVV SSSSDYGNEV QAVHNVNPTR SYECNFCKRG FSNAQALGGH  60
MNLHRKDKAK IKEQQQFSSS SNQITHHQQF LLEGNLGSNN DNNKELLNVP HQPVMDDETN  120
NNNNVVMMRQ LPLFSESSSS PHHHLQQQED QISGQQGPSS SSELDLELRL GLEPPQGSNS  180
SSATITGTRK FF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952529.11e-141PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A072UWD44e-32A0A072UWD4_MEDTR; Transcriptional regulator superman protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-17C2H2 family protein